PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG632900.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 246aa MW: 27043.3 Da PI: 6.4174

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG632900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.7	1.2e-14	72	124	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ +hn+ Er RR+++N+ ++ Lr+llP a + kKls +++ ++ +YI +Lq Pavir.5NG632900.3.p 72 RKHSHNAYERDRRKQLNELYSSLRSLLPDA--DHTKKLSIPTTVSRVLKYIPELQ 124 6899***********************7..35666*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-16	68	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.75E-11	71	127	No hit	No description
PROSITE profile	PS50888	14.119	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-13	72	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-12	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-10	77	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEHQLFDDPF SSSISSLEAD IFSAGGQLPS PPWPDLDLDL DDDDIHDLSA PTGNPTSSGG 60 YGSGGGSGGS HRKHSHNAYE RDRRKQLNEL YSSLRSLLPD ADHTKKLSIP TTVSRVLKYI 120 PELQKQVDNL ERRKKELTNA NCKPGVLNTS QIVTPIVSAT CLNDTEIMVQ VSLHSNVAAT 180 SLPLSKCIKV MENEGLHLIS SSTYSTFDNR TFYSLHVQRS QRTMKEECPA FCDELERIIK 240 KKAGA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.3452	0.0	callus\| leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971295.1	1e-141	PREDICTED: transcription factor ORG3-like
TrEMBL	K3XLE7	1e-141	K3XLE7_SETIT; Uncharacterized protein
STRING	Si002720m	1e-141	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04150.1	1e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.5NG632900.3.p